Matthew A. Clarke
Matthew A. Clarke
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Drug Discovery
MAGELLAN: Automated Generation of Interpretable Computational Models for Biological Reasoning
Computational models have become essential tools for understanding signalling networks and their non-linear dynamics. However, these …
Matthew A. Clarke
,
Charlie George Barker
,
Yuxin Sun
,
Theodoros I. Roumeliotis
,
Jyoti S. Choudhary
,
Jasmin Fisher
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Project
DOI
Automating Drug Discovery
Computational models have become essential tools for understanding signalling networks and their non-linear dynamics. However, these models are typically constructed manually using prior knowledge and can be over-reliant on study bias. Scaling up the construction and analysisof models to take advantage of increasingly abundant ‘omics data can bridge these gaps by providing a comprehensive view of signalling events and how they influence cellular phenotypes.
Matthew A. Clarke
Clarke, Barker & Sun et al. (2025)
Clarke, Barker & Sun et al. (2025)
Predicting Personalised Therapeutic Combinations in Non-Small Cell Lung Cancer Using In Silico Modelling
The disease burden from non-small cell lung cancer (NSCLC) adenocarcinoma is substantial, with around a million new cases diagnosed …
Matthew A. Clarke
,
Charlie George Barker
,
Ashley Nicholls
,
Matt P. Handler
,
Lisa Pickard
,
Amna Shah
,
David Walter
,
Etienne De Braekeleer
,
Udai Banerji
,
Jyoti Choudhary
,
Saif Ahmed
,
Ultan McDermott
,
Gregory J. Hannon
,
Jasmin Fisher
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Project
DNA Damage Repair and Radiotherapy
Cancers often emerge, in part, due to deficencies in DNA damage repair, making them vulnerable to DNA damaging treatments such as radiotherapy. While radiotherapy efficacy has been increasing, this is mainly due to better targeting of tumour anatomy, but targeted therapy offers the opportunity to radiosensitise tumour cells by targeting vulnerabilities in the tumour biology. We use computational modelling to find such vulnerabilities, and explore potential resistance mechanisms.
Matthew A. Clarke
Clarke, Barker & Nicholls et al. (2025)
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