Matthew A. Clarke
Matthew A. Clarke
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Network Modelling
Combination therapy
Computatational modelling allows screening of thousands of combinations of drugs to find the most effective treatments. This allows for better protection against the emergence of resistance, as well as rapid drug repurposing e.g. to combat emerging diseases such as COVID-19.
Matthew A. Clarke
PDF
DNA Damage Repair and Radiotherapy
Cancers often emerge, in part, due to deficencies in DNA damage repair, making them vulnerable to DNA damaging treatments such as radiotherapy. While radiotherapy efficacy has been increasing, this is mainly due to better targeting of tumour anatomy, but targeted therapy offers the opportunity to radiosensitise tumour cells by targeting vulnerabilities in the tumour biology. We use computational modelling to find such vulnerabilities, and explore potential resistance mechanisms.
Matthew A. Clarke
HOXA9 has the hallmarks of a biological switch with implications in blood cancers
Blood malignancies arise from the dysregulation of haematopoiesis. The type of blood cell and the specific order of oncogenic events …
Laure Talarmain
,
Matthew A. Clarke
,
David Shorthouse
,
Lilia Cabrera-Cosme
,
David G. Kent
,
Jasmin Fisher
,
Benjamin A. Hall
PDF
Code
Dataset
Project
DOI
Executable cancer models: successes and challenges
Making decisions on how best to treat cancer patients requires the integration of different data sets, including genomic profiles, …
Matthew A. Clarke
,
Jasmin Fisher
PDF
DOI
Heterogeneity of Myc expression in breast cancer exposes pharmacological vulnerabilities revealed through executable mechanistic modeling
Cells with higher levels of Myc proliferate more rapidly and supercompetitively eliminate neighboring cells. Nonetheless, tumor cells …
Peter Kreuzaler
,
Matthew A. Clarke
,
Elizabeth J. Brown
,
Catherine H. Wilson
,
Roderik M. Kortlever
,
Nir Piterman
,
Trevor Littlewood
,
Gerard I. Evan
,
Jasmin Fisher
PDF
Dataset
Project
DOI
Predictive Computational Modelling of the c-myc Gene Regulatory Network for Combinatorial Treatments of Breast Cancer
As cancer tumours develop, competition between cells will favour those with some mutations over others, creating a dynamic …
Matthew A. Clarke
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DOI
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